Zeldovich, Konstantin: search on Z-Library

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1

Synonymous mutations at the beginning of the influenza A virus hemagglutinin gene impact experimental fitness

Canale, Aneth S., Venev, Sergey V., Whitfield, Troy W., Caffrey, Daniel R., Marasco, Wayne A., Schiffer, Celia A., Kowalik, Timothy F., Jensen, Jeffrey D., Finberg, Robert W., Zeldovich, Konstantin B.

Journal:

Journal of Molecular Biology

Year:

2018

Language:

english

File:

PDF, 6.87 MB

english, 2018

2

The Folding Mechanics of a Knotted Protein

Stefan Wallin, Konstantin B. Zeldovich, Eugene I. Shakhnovich

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.22 MB

english, 2007

3

Protein and DNA Sequence Determinants of Thermophilic Adaptation

Zeldovich, Konstantin B., Berezovsky, Igor N., Shakhnovich, Eugene I.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 509 KB

english, 2007

4

Motion of single long DNA molecules through arrays of magnetic columns

Nicolas Minc, Plamen Bokov, Konstantin B. Zeldovich, Claus Fütterer, Jean-Louis Viovy, Kevin D. Dorfman

Journal:

ELECTROPHORESIS

Year:

2005

Language:

english

File:

PDF, 393 KB

english, 2005

5

Structure of Charged Poly(propylene imine) Dendrimers: Theoretical Investigation

Elena N. Govorun, Konstantin B. Zeldovich, Alexei R. Khokhlov

Journal:

Macromolecular Theory and Simulations

Year:

2003

Language:

english

File:

PDF, 182 KB

english, 2003

6

Diversity Against Adversity: How Adaptive Immune System Evolves Potent Antibodies

Muyoung Heo, Konstantin B. Zeldovich, Eugene I. Shakhnovich

Journal:

Journal of Statistical Physics

Year:

2011

Language:

english

File:

PDF, 1.12 MB

english, 2011

7

Physical Origins of Protein Superfamilies

Konstantin B. Zeldovich, Igor N. Berezovsky, Eugene I. Shakhnovich

Journal:

Journal of Molecular Biology

Year:

2006

Language:

english

File:

PDF, 430 KB

english, 2006

8

Segment Self-Repulsion is the Major Driving Force of Influenza Genome Packaging

Venev, Sergey V., Zeldovich, Konstantin B.

Journal:

Physical Review Letters

Year:

2013

Language:

english

File:

PDF, 312 KB

english, 2013

9

Understanding Protein Evolution: From Protein Physics to Darwinian Selection

Zeldovich, Konstantin B., Shakhnovich, Eugene I.

Journal:

Annual Review of Physical Chemistry

Year:

2008

Language:

english

File:

PDF, 462 KB

english, 2008

10

Analyses of the Effects of All Ubiquitin Point Mutants on Yeast Growth Rate

Roscoe, Benjamin P., Thayer, Kelly M., Zeldovich, Konstantin B., Fushman, David, Bolon, Daniel N.A.

Journal:

Journal of Molecular Biology

Year:

2013

Language:

english

File:

PDF, 1.13 MB

english, 2013

11

Interplay of ionic and nonionic interactions in weakly charged polyelectrolytes

Khokhlov, Alexei R., Makhaeva, Elena E., Zeldovich, Konstantin B.

Journal:

Macromolecular Symposia

Year:

1997

Language:

english

File:

PDF, 360 KB

english, 1997

12

Latent Effects of Hsp90 Mutants Revealed at Reduced Expression Levels

Jiang, Li, Mishra, Parul, Hietpas, Ryan T., Zeldovich, Konstantin B., Bolon, Daniel N. A., Serio, Tricia R.

Journal:

Year:

2013

Language:

english

File:

PDF, 816 KB

english, 2013

13

A First-Principles Model of Early Evolution: Emergence of Gene Families, Species, and Preferred Protein Folds

Zeldovich, Konstantin B., Chen, Peiqiu, Shakhnovich, Boris E., Shakhnovich, Eugene I.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 780 KB

english, 2007

14

Positive and Negative Design in Stability and Thermal Adaptation of Natural Proteins

Berezovsky, Igor N., Zeldovich, Konstantin B., Shakhnovich, Eugene I.

Journal:

PLoS Computational Biology

Year:

2007

Language:

english

File:

PDF, 718 KB

english, 2007

15

Massively parallel sampling of lattice proteins reveals foundations of thermal adaptation

Venev, Sergey V., Zeldovich, Konstantin B.

Journal:

The Journal of Chemical Physics

Year:

2015

Language:

english

File:

PDF, 1.49 MB

english, 2015

16

A balance between inhibitor binding and substrate processing confers influenza drug resistance

Jiang, Li, Liu, Ping, Bank, Claudia, Renzette, Nicholas, Prachanronarong, Kristina, Yilmaz, Lutfu S., Caffrey, Daniel R., Zeldovich, Konstantin B., Schiffer, Celia A., Kowalik, Timothy F., Jensen, Jef

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 1.93 MB

english, 2015

17

An experimental evaluation of drug-induced mutational meltdown as an antiviral treatment strategy

Bank, Claudia, Renzette, Nicholas, Liu, Ping, Matuszewski, Sebastian, Shim, Hyunjin, Foll, Matthieu, Bolon, Daniel N. A., Zeldovich, Konstantin B., Kowalik, Timothy F., Finberg, Robert W., Wang, Jenni

Journal:

Year:

2016

Language:

english

File:

PDF, 2.09 MB

english, 2016

18

Molecular Basis for Differential Patterns of Drug Resistance in Influenza N1 And N2 Neuraminidase

Prachanronarong, Kristina L, Ozen, Aysegul, Thayer, Kelly Marie, Yilmaz, Lutfu Safak, Zeldovich, Konstantin B., Bolon, Daniel N., Kowalik, Timothy F., Jensen, Jeffrey D., Finberg, Robert W., Wang, Jen

Journal:

Journal of Chemical Theory and Computation

Year:

2016

Language:

english

File:

PDF, 2.15 MB

english, 2016

19

The Combined Effect of Oseltamivir and Favipiravir on Influenza A Virus Evolution

Ormond, Louise, Liu, Ping, Matuszewski, Sebastian, Renzette, Nicholas, Bank, Claudia, Zeldovich, Konstantin, Bolon, Daniel N., Kowalik, Timothy F., Finberg, Robert W., Jensen, Jeffrey D., Wang, Jennif

Journal:

Genome Biology and Evolution

Year:

2017

Language:

english

File:

PDF, 947 KB

english, 2017

20

Correlation of fitness landscapes from three orthologous TIM barrels originates from sequence and structure constraints

Chan, Yvonne H., Venev, Sergey V., Zeldovich, Konstantin B., Matthews, C. Robert

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 1.90 MB

english, 2017

21

Elucidating the Interdependence of Drug Resistance from Combinations of Mutations

Ragland, Debra A., Whitfield, Troy W., Lee, Sook-Kyung, Swanstrom, Ronald, Zeldovich, Konstantin B., Kurt Yilmaz, Nese, Schiffer, Celia A.

Journal:

Journal of Chemical Theory and Computation

Year:

2017

Language:

english

File:

PDF, 14.22 MB

english, 2017

22

Thermophilic Adaptation in Prokaryotes Is Constrained by Metabolic Costs of Proteostasis

Venev, Sergey V, Zeldovich, Konstantin B

Journal:

Molecular Biology and Evolution

Year:

2018

Language:

english

File:

PDF, 1.15 MB

english, 2018

23

Mutations in influenza A virus neuraminidase and hemagglutinin confer resistance against a broadly neutralizing hemagglutinin stem antibody

Prachanronarong, Kristina L., Canale, Aneth S., Liu, Ping, Somasundaran, Mohan, Hou, Shurong, Poh, Yu-Ping, Han, Thomas, Zhu, Quan, Renzette, Nicholas, Zeldovich, Konstantin B., Kowalik, Timothy F., K

Journal:

Journal of Virology

Year:

2018

Language:

english

File:

PDF, 3.83 MB

english, 2018

24

Constrained mutational sampling of amino acids in HIV-1 protease evolution

Boucher, Jeffrey I, Whitfield, Troy W, Dauphin, Ann, Nachum, Gily, Hollins, Carl, Zeldovich, Konstantin B, Swanstrom, Ronald, Schiffer, Celia A, Luban, Jeremy, Bolon, Daniel N A, Malik, Harmit

Journal:

Molecular Biology and Evolution

Year:

2019

File:

PDF, 3.35 MB

2019

25

Characterizing protein-ligand binding using atomistic simulation and machine learning: Application to drug resistance in HIV-1 protease

Whitfield, Troy W., Ragland, Debra A., Zeldovich, Konstantin B., Schiffer, Celia A.

Journal:

Journal of Chemical Theory and Computation

Year:

2019

Language:

english

File:

PDF, 6.74 MB

english, 2019

26

Characterizing protein-ligand binding using atomistic simulation and machine learning: Application to drug resistance in HIV-1 protease

Whitfield, Troy W., Ragland, Debra A., Zeldovich, Konstantin B., Schiffer, Celia A.

Journal:

Journal of Chemical Theory and Computation

Year:

2019

File:

PDF, 6.74 MB

2019

27

An allosteric pathway explains beneficial fitness in yeast for longârange mutations in an essential TIM barrel enzyme

Chan, Yvonne H., Zeldovich, Konstantin B., Matthews, C. Robert

Journal:

Protein Science

Year:

2020

File:

PDF, 1.81 MB

2020

28

The adaptive potential of the middle domain of yeast Hsp90

Cote-Hammarlof, Pamela A, Fragata, InÃªs, Flynn, Julia, Mavor, David, Zeldovich, Konstantin B, Bank, Claudia, Bolon, Daniel N A, Agashe, Deepa

Journal:

Molecular Biology and Evolution

Year:

2020

File:

PDF, 2.76 MB

2020